PSBench

a large-scale benchmark for estimating the accuracy of protein complex structural models

Upload Your Files

Submit FASTA sequence and PDB structure files for the predicted and native structure for quality scores annotation and future references (User can select between Single file upload mode and Zip (bulk) upload mode).

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Choose either single file upload or ZIP upload mode.
Protein sequence in FASTA format (.fasta, .fa)
📄 Click to select FASTA file
Computational prediction of protein structure (.pdb)
🔮 Click to select predicted PDB file
Experimentally determined protein structure (.pdb)
🧪 Click to select native PDB file

📋 Required Files

  • FASTA sequence file
  • Predicted PDB structure
  • Native PDB structure
  • Or a compressed file containing everything

© Neupane, P., Liu, J., & Cheng, J. PSBench: a large-scale benchmark for estimating the accuracy of protein complex structural models. The Thirty-Ninth Annual Conference on Neural Information Processing Systems (NeurIPS), 2025